Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| EDY80517.1 | EDY81789.1 | VDG1235_131 | VDG1235_1407 | Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-binding domain protein; [C] COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit. | tRNA synthetases class I (E and Q), catalytic domain, putative; [J] COG0008 Glutamyl- and glutaminyl-tRNA synthetases; Belongs to the class-I aminoacyl-tRNA synthetase family. | 0.470 |
| EDY80517.1 | EDY82064.1 | VDG1235_131 | VDG1235_1684 | Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-binding domain protein; [C] COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit. | AMP-binding enzyme domain protein; [Q] COG1020 Non-ribosomal peptide synthetase modules and related proteins. | 0.850 |
| EDY80517.1 | EDY83629.1 | VDG1235_131 | VDG1235_3256 | Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-binding domain protein; [C] COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit. | ExsB family; [Q] COG1020 Non-ribosomal peptide synthetase modules and related proteins. | 0.853 |
| EDY80517.1 | hemA | VDG1235_131 | VDG1235_4775 | Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-binding domain protein; [C] COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit. | glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA). | 0.763 |
| EDY81789.1 | EDY80517.1 | VDG1235_1407 | VDG1235_131 | tRNA synthetases class I (E and Q), catalytic domain, putative; [J] COG0008 Glutamyl- and glutaminyl-tRNA synthetases; Belongs to the class-I aminoacyl-tRNA synthetase family. | Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-binding domain protein; [C] COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit. | 0.470 |
| EDY81789.1 | hemA | VDG1235_1407 | VDG1235_4775 | tRNA synthetases class I (E and Q), catalytic domain, putative; [J] COG0008 Glutamyl- and glutaminyl-tRNA synthetases; Belongs to the class-I aminoacyl-tRNA synthetase family. | glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA). | 0.745 |
| EDY81930.1 | EDY82064.1 | VDG1235_1550 | VDG1235_1684 | Aminotransferase, class III superfamily; [H] COG0001 Glutamate-1-semialdehyde aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. | AMP-binding enzyme domain protein; [Q] COG1020 Non-ribosomal peptide synthetase modules and related proteins. | 0.993 |
| EDY81930.1 | EDY82493.1 | VDG1235_1550 | VDG1235_2116 | Aminotransferase, class III superfamily; [H] COG0001 Glutamate-1-semialdehyde aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. | [H] COG0113 Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family. | 0.937 |
| EDY81930.1 | EDY83004.1 | VDG1235_1550 | VDG1235_2627 | Aminotransferase, class III superfamily; [H] COG0001 Glutamate-1-semialdehyde aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. | uroporphyrin-III C-methyltransferase domain protein; [H] COG0007 Uroporphyrinogen-III methylase. | 0.939 |
| EDY81930.1 | EDY83629.1 | VDG1235_1550 | VDG1235_3256 | Aminotransferase, class III superfamily; [H] COG0001 Glutamate-1-semialdehyde aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. | ExsB family; [Q] COG1020 Non-ribosomal peptide synthetase modules and related proteins. | 0.948 |
| EDY81930.1 | EDY84553.1 | VDG1235_1550 | VDG1235_4184 | Aminotransferase, class III superfamily; [H] COG0001 Glutamate-1-semialdehyde aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. | Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family. | 0.888 |
| EDY81930.1 | hemA | VDG1235_1550 | VDG1235_4775 | Aminotransferase, class III superfamily; [H] COG0001 Glutamate-1-semialdehyde aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. | glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA). | 0.918 |
| EDY82064.1 | EDY80517.1 | VDG1235_1684 | VDG1235_131 | AMP-binding enzyme domain protein; [Q] COG1020 Non-ribosomal peptide synthetase modules and related proteins. | Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-binding domain protein; [C] COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit. | 0.850 |
| EDY82064.1 | EDY81930.1 | VDG1235_1684 | VDG1235_1550 | AMP-binding enzyme domain protein; [Q] COG1020 Non-ribosomal peptide synthetase modules and related proteins. | Aminotransferase, class III superfamily; [H] COG0001 Glutamate-1-semialdehyde aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. | 0.993 |
| EDY82064.1 | EDY82493.1 | VDG1235_1684 | VDG1235_2116 | AMP-binding enzyme domain protein; [Q] COG1020 Non-ribosomal peptide synthetase modules and related proteins. | [H] COG0113 Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family. | 0.815 |
| EDY82064.1 | EDY83629.1 | VDG1235_1684 | VDG1235_3256 | AMP-binding enzyme domain protein; [Q] COG1020 Non-ribosomal peptide synthetase modules and related proteins. | ExsB family; [Q] COG1020 Non-ribosomal peptide synthetase modules and related proteins. | 0.999 |
| EDY82064.1 | hemA | VDG1235_1684 | VDG1235_4775 | AMP-binding enzyme domain protein; [Q] COG1020 Non-ribosomal peptide synthetase modules and related proteins. | glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA). | 0.829 |
| EDY82064.1 | hemL | VDG1235_1684 | VDG1235_4479 | AMP-binding enzyme domain protein; [Q] COG1020 Non-ribosomal peptide synthetase modules and related proteins. | Glutamate-1-semialdehyde-2,1-aminomutase; [H] COG0001 Glutamate-1-semialdehyde aminotransferase. | 0.992 |
| EDY82493.1 | EDY81930.1 | VDG1235_2116 | VDG1235_1550 | [H] COG0113 Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family. | Aminotransferase, class III superfamily; [H] COG0001 Glutamate-1-semialdehyde aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. | 0.937 |
| EDY82493.1 | EDY82064.1 | VDG1235_2116 | VDG1235_1684 | [H] COG0113 Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family. | AMP-binding enzyme domain protein; [Q] COG1020 Non-ribosomal peptide synthetase modules and related proteins. | 0.815 |
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