STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rbsAABC transporter, ATP-binding protein; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family. (513 aa)    
Predicted Functional Partners:
EDY84521.1
Amino acid or sugar ABC transport system, permease protein, putative; [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components.
 0.999
EDY82606.1
Hypothetical protein; [G] COG1879 ABC-type sugar transport system, periplasmic component; Periplasmic binding proteins and sugar binding domain of the LacI family, putative.
 0.954
EDY84348.1
Amino acid or sugar ABC transport system, permease protein, putative; [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components.
 0.951
EDY84821.1
Amino acid or sugar ABC transport system, permease protein, putative; [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components.
 0.951
EDY82420.1
Hypothetical protein; [G] COG1879 ABC-type sugar transport system, periplasmic component; Periplasmic binding proteins and sugar binding domain of the LacI family, putative.
 0.940
EDY83672.1
[G] COG4214 ABC-type xylose transport system, permease component; Belongs to the binding-protein-dependent transport system permease family.
 
 0.900
EDY83012.1
Hypothetical protein; [G] COG4213 ABC-type xylose transport system, periplasmic component; Periplasmic binding proteins and sugar binding domain of the LacI family, putative.
 
 0.871
EDY81794.1
Conserved hypothetical protein, putative; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
 
     0.684
EDY81380.1
Conserved hypothetical protein, putative; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
 
     0.670
EDY82411.1
Pectate lyase, putative; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
 
     0.666
Your Current Organism:
Verrucomicrobiae bacterium DG1235
NCBI taxonomy Id: 382464
Other names: V. bacterium DG1235, Verrucomicrobiae bacterium str. DG1235, Verrucomicrobiae bacterium strain DG1235, Verrucomicrobiales bacterium DG1235
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.