STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDY85190.1DNA protecting protein DprA, putative; [LU] COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake. (376 aa)    
Predicted Functional Partners:
EDY84764.1
Hypothetical protein; [R] COG1040 Predicted amidophosphoribosyltransferases.
 
 
 0.932
EDY80936.1
Mg chelatase family protein; [O] COG0606 Predicted ATPase with chaperone activity.
 
 0.913
EDY83661.1
Competence protein; [R] COG0658 Predicted membrane metal-binding protein.
 
  
 0.851
EDY82296.1
Bacterial Peptidase A24 N-terminal domain family; [NOU] COG1989 Type II secretory pathway, prepilin signal peptidase PulO and related peptidases.
  
  
 0.750
EDY82820.1
[R] COG0790 FOG: TPR repeat, SEL1 subfamily.
  
   0.676
EDY82756.1
DNA repair protein RadC; [E] COG1168 Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities; Belongs to the UPF0758 family.
  
  
 0.668
fliP
Flagellar biosynthetic protein FliP; Plays a role in the flagellum-specific transport system. Belongs to the FliP/MopC/SpaP family.
  
    0.646
nnrD
Carbohydrate kinase family; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. In the C-terminal section; belongs to the NnrD/CARKD family.
 
     0.639
EDY83373.1
single-stranded-DNA-specific exonuclease RecJ; [L] COG0608 Single-stranded DNA-specific exonuclease.
 
   
 0.628
EDY81053.1
Hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
       0.592
Your Current Organism:
Verrucomicrobiae bacterium DG1235
NCBI taxonomy Id: 382464
Other names: V. bacterium DG1235, Verrucomicrobiae bacterium str. DG1235, Verrucomicrobiae bacterium strain DG1235, Verrucomicrobiales bacterium DG1235
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.