STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDY85204.1poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit subfamily; [I] COG3243 Poly(3-hydroxyalkanoate) synthetase. (366 aa)    
Predicted Functional Partners:
EDY80717.1
PHB/PHA accumulation regulator DNA-binding domain protein; [S] COG5394 Uncharacterized protein conserved in bacteria.
 
   
 0.881
EDY83260.1
acetyl-CoA acetyltransferases subfamily; [I] COG0183 Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
 
  
 0.811
EDY81166.1
Hypothetical protein.
       0.774
EDY84753.1
Hypothetical protein; [I] COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta); Carboxyl transferase domain, putative.
       0.651
EDY82634.1
Phosphate acetyltransferase, putative; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
  
 
 0.649
EDY81634.1
Carbamoyl-phosphate synthase L chain, ATP binding domain protein; [I] COG0439 Biotin carboxylase.
       0.618
EDY84832.1
Biotin-requiring enzyme domain protein; [I] COG0511 Biotin carboxyl carrier protein.
       0.618
EDY80802.1
Hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
     
 0.567
EDY83442.1
Oxidoreductase, short chain dehydrogenase/reductase family; [IQR] COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
 
 
 0.562
EDY83275.1
KR domain superfamily; [IQR] COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
 
 
 0.536
Your Current Organism:
Verrucomicrobiae bacterium DG1235
NCBI taxonomy Id: 382464
Other names: V. bacterium DG1235, Verrucomicrobiae bacterium str. DG1235, Verrucomicrobiae bacterium strain DG1235, Verrucomicrobiales bacterium DG1235
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