STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDY85256.1Hypothetical protein; [V] COG1002 Type II restriction enzyme, methylase subunits. (1284 aa)    
Predicted Functional Partners:
EDY83482.1
Helicase conserved C-terminal domain protein; [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family.
    0.959
EDY82210.1
Hypothetical protein.
 
    0.890
EDY83158.1
Hypothetical protein.
       0.786
EDY84863.1
Hypothetical protein.
  
    0.782
EDY81256.1
Hypothetical protein.
       0.773
EDY84236.1
Hypothetical protein; [V] COG1002 Type II restriction enzyme, methylase subunits.
  
     0.707
EDY80640.1
Helicase conserved C-terminal domain protein; [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family; overlaps another CDS with the same product name.
 
     0.669
EDY81566.1
Acetyltransferase, GNAT family.
       0.655
EDY83786.1
[R] COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster; overlaps another CDS with the same product name.
 
     0.609
EDY81038.1
DEAD/DEAH box helicase domain protein; [R] COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster.
 
     0.511
Your Current Organism:
Verrucomicrobiae bacterium DG1235
NCBI taxonomy Id: 382464
Other names: V. bacterium DG1235, Verrucomicrobiae bacterium str. DG1235, Verrucomicrobiae bacterium strain DG1235, Verrucomicrobiales bacterium DG1235
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.