STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDY80971.1[V] COG1680 Beta-lactamase class C and other penicillin binding proteins. (421 aa)    
Predicted Functional Partners:
EDY80757.1
[S] COG3876 Uncharacterized protein conserved in bacteria.
    0.927
EDY81960.1
[V] COG1680 Beta-lactamase class C and other penicillin binding proteins.
  
     0.757
EDY83826.1
Tetratricopeptide repeat domain protein; [S] COG5616 Predicted integral membrane protein.
 
    0.749
EDY80851.1
[F] COG0516 IMP dehydrogenase/GMP reductase.
   
 
  0.601
guaA
GMP synthase, C-terminal domain protein; Catalyzes the synthesis of GMP from XMP.
    
 0.516
EDY81966.1
Tetratricopeptide repeat domain protein; [S] COG5616 Predicted integral membrane protein.
 
    0.513
EDY83860.1
Tetratricopeptide repeat domain protein; [S] COG5616 Predicted integral membrane protein.
 
    0.505
EDY82721.1
[C] COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit.
    
 0.436
EDY83969.1
[S] COG0586 Uncharacterized membrane-associated protein.
    
 0.418
EDY82064.1
AMP-binding enzyme domain protein; [Q] COG1020 Non-ribosomal peptide synthetase modules and related proteins.
  
  
 0.409
Your Current Organism:
Verrucomicrobiae bacterium DG1235
NCBI taxonomy Id: 382464
Other names: V. bacterium DG1235, Verrucomicrobiae bacterium str. DG1235, Verrucomicrobiae bacterium strain DG1235, Verrucomicrobiales bacterium DG1235
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.