STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDY80984.1Nitroreductase family protein; [C] COG0778 Nitroreductase. (216 aa)    
Predicted Functional Partners:
EDY83004.1
uroporphyrin-III C-methyltransferase domain protein; [H] COG0007 Uroporphyrinogen-III methylase.
  
 
 0.888
birA
biotin-(acetyl-CoA-carboxylase) ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
  
    0.815
EDY83394.1
MoeZ/MoeB domain family; [H] COG0476 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2.
    
 0.801
EDY85163.1
Transporter, major facilitator family, putative; [IQ] COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
   
 
 0.666
EDY80629.1
ABC-2 type transporter family; [V] COG0842 ABC-type multidrug transport system, permease component.
  
  
 0.648
EDY80685.1
Hypothetical protein; [V] COG0842 ABC-type multidrug transport system, permease component.
  
  
 0.648
EDY83674.1
ABC-2 type transporter family; [V] COG0842 ABC-type multidrug transport system, permease component.
  
  
 0.648
EDY85019.1
Hypothetical protein.
  
  
 0.648
EDY81783.1
Pyridine nucleotide-disulphide oxidoreductase domain protein; [R] COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases.
    
 0.637
EDY83687.1
Aminotransferase, classes I and II superfamily; Involved in the synthesis of meso-diaminopimelate (m-DAP or DL-DAP), required for both lysine and peptidoglycan biosynthesis. Catalyzes the direct conversion of tetrahydrodipicolinate to LL- diaminopimelate; Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family. LL-diaminopimelate aminotransferase subfamily.
  
  
 0.614
Your Current Organism:
Verrucomicrobiae bacterium DG1235
NCBI taxonomy Id: 382464
Other names: V. bacterium DG1235, Verrucomicrobiae bacterium str. DG1235, Verrucomicrobiae bacterium strain DG1235, Verrucomicrobiales bacterium DG1235
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