STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VDG1235_8Hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit. (416 aa)    
Predicted Functional Partners:
EDY80777.1
Endonuclease/exonuclease/phosphatase family; [R] COG2374 Predicted extracellular nuclease.
  
 0.963
EDY84138.1
Cytochrome c subfamily, putative; [G] COG4993 Glucose dehydrogenase.
  
 0.929
EDY81749.1
Competence/damage-inducible protein CinA N-terminal domain, putative; [R] COG1058 Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA; Belongs to the CinA family.
  
 
  0.906
EDY84877.1
Ser/Thr protein phosphatase family protein; [F] COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases; Belongs to the 5'-nucleotidase family.
 
   
  0.901
EDY80851.1
[F] COG0516 IMP dehydrogenase/GMP reductase.
    
 0.895
guaA
GMP synthase, C-terminal domain protein; Catalyzes the synthesis of GMP from XMP.
    
 0.893
EDY82766.1
[E] COG0069 Glutamate synthase domain 2.
    
  0.869
EDY84130.1
[E] COG0069 Glutamate synthase domain 2.
    
  0.869
EDY82064.1
AMP-binding enzyme domain protein; [Q] COG1020 Non-ribosomal peptide synthetase modules and related proteins.
  
 
 0.858
EDY80596.1
Hypothetical protein.
 
   
  0.845
Your Current Organism:
Verrucomicrobiae bacterium DG1235
NCBI taxonomy Id: 382464
Other names: V. bacterium DG1235, Verrucomicrobiae bacterium str. DG1235, Verrucomicrobiae bacterium strain DG1235, Verrucomicrobiales bacterium DG1235
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.