STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDY81381.1UreE urease accessory protein, C-terminal domain; Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly. (143 aa)    
Predicted Functional Partners:
ureF
UreF, putative; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.
 
  
 0.989
ureC
Urease, alpha subunit; [E] COG0804 Urea amidohydrolase (urease) alpha subunit.
  
  
 0.988
ureG
Urease accessory protein UreG; Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG.
  
 
 0.981
EDY82119.1
Urease, gamma subunit; [E] COG0831 Urea amidohydrolase (urease) gamma subunit; Belongs to the urease gamma subunit family.
  
  
 0.951
ureB
Urease, beta subunit; [E] COG0832 Urea amidohydrolase (urease) beta subunit; Belongs to the urease beta subunit family.
  
  
 0.951
ureD
Urease accessory protein UreD; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.
 
  
 0.878
EDY83706.1
Hypothetical protein; [T] COG2203 FOG: GAF domain; GAF domain, putative.
 
     0.748
EDY81507.1
Bacterial type II and III secretion system protein; [NU] COG1450 Type II secretory pathway, component PulD; Belongs to the bacterial secretin family.
  
     0.584
EDY85259.1
Tetratricopeptide repeat domain protein; [R] COG4105 DNA uptake lipoprotein.
  
     0.581
EDY81862.1
OstA-like protein; [M] COG1452 Organic solvent tolerance protein OstA.
  
   
 0.579
Your Current Organism:
Verrucomicrobiae bacterium DG1235
NCBI taxonomy Id: 382464
Other names: V. bacterium DG1235, Verrucomicrobiae bacterium str. DG1235, Verrucomicrobiae bacterium strain DG1235, Verrucomicrobiales bacterium DG1235
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