STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
oppA-2ABC-type oligopeptide transport system,periplasmic component fragment 2; (P55691) Hypothetical protein Y4WM precursor; High confidence in function and specificity. (153 aa)    
Predicted Functional Partners:
oppA
ABC-type oligopeptide transport system,periplasmic component fragment 1; (P33913) Hypothetical protein yejA precursor; High confidence in function and specificity.
     0.994
oppA-3
ABC-type oligopeptide transport system,periplasmic component fragment 3; (P33913) Hypothetical protein yejA precursor; High confidence in function and specificity.
     0.984
oppA-5
ABC-type oligopeptide transport system,periplasmic component fragment 5; (P55691) Hypothetical protein Y4WM precursor; High confidence in function and specificity.
     0.983
oppB-3
(P33914) Hypothetical ABC transporter permease protein yejB; High confidence in function and specificity.
 
  
 0.842
trpS
Tryptophan--tRNA ligase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.
  
    0.789
oppB-2
Oligopeptide ABC transporter, permease protein fragment 2; (P33914) Hypothetical ABC transporter permease protein yejB; High confidence in function and specificity.
 
  
 0.783
oppC-4
ABC-type oligopeptide transport, permease component oppC fragment 3; ABC transporter permease protein; Function unclear.
 
    0.778
oppC-3
ABC-type peptide transport, permease component; Function unclear.
 
    0.768
oppC-5
ABC-type peptide transport, permease component; Function unclear.
 
    0.758
oppA-4
ABC-type oligopeptide transport system,periplasmic component fragment 4; Function unclear.
       0.689
Your Current Organism:
Helicobacter acinonychis
NCBI taxonomy Id: 382638
Other names: H. acinonychis str. Sheeba, Helicobacter acinonychis Sheeba, Helicobacter acinonychis str. Sheeba, Helicobacter acinonychis strain Sheeba
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.