STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
prtC(P56113) Putative protease HP0169 precursor (EC 3.4.-.-); hypothetical protein. (425 aa)    
Predicted Functional Partners:
Hac_0351
Conserved hypothetical protein; (Q18823) Laminin-like protein C54D1.5 precursor; hypothetical protein.
       0.820
prfB
Peptide chain release factor RF-2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.
 
   
 0.716
Hac_0348
Conserved hypothetical protein.
       0.645
Hac_0349
Conserved hypothetical protein.
       0.645
hemN
Oxygen-independent coproporphyrinogen III oxidase (EC 1.-.-.-) (Coproporphyrinogenase) (Coprogen oxidase); High confidence in function and specificity; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
  
    0.487
fliR
Flagellar biosynthesis protein; Role in flagellar biosynthesis. Belongs to the FliR/MopE/SpaR family.
       0.460
Hac_0354
Conserved hypothetical protein.
       0.460
Your Current Organism:
Helicobacter acinonychis
NCBI taxonomy Id: 382638
Other names: H. acinonychis str. Sheeba, Helicobacter acinonychis Sheeba, Helicobacter acinonychis str. Sheeba, Helicobacter acinonychis strain Sheeba
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.