STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vacA-15Vacuolating cytotoxin vacA fragment 1; (Q48253) Vacuolating cytotoxin precursor; High confidence in function and specificity. (64 aa)    
Predicted Functional Partners:
vacA-16
(Q48253) Vacuolating cytotoxin precursor; High confidence in function and specificity.
       0.578
vacA-17
Vacuolating cytotoxin vacA fragment 3; (Q48258) Vacuolating cytotoxin precursor; Conserved hypothetical protein.
       0.578
vacA-18
Vacuolating cytotoxin vacA fragment 4; (P55981) Vacuolating cytotoxin precursor; hypothetical protein.
       0.530
vacA-19
(Q9ZKW5) Vacuolating cytotoxin precursor; High confidence in function and specificity.
       0.514
Your Current Organism:
Helicobacter acinonychis
NCBI taxonomy Id: 382638
Other names: H. acinonychis str. Sheeba, Helicobacter acinonychis Sheeba, Helicobacter acinonychis str. Sheeba, Helicobacter acinonychis strain Sheeba
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.