STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101489260RBR-type E3 ubiquitin transferase. (651 aa)    
Predicted Functional Partners:
LOC101511195
Eukaryotic peptide chain release factor GTP-binding subunit-like isoform X1.
   
 
 0.566
LOC101508052
Eukaryotic peptide chain release factor GTP-binding subunit ERF3A isoform X1.
   
 
 0.566
LOC101505275
tRNA-dihydrouridine(20) synthase [NAD(P)+]-like.
    
 
 0.532
LOC101501594
Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.
     
 0.509
LOC101506033
NEDD8-activating enzyme E1 catalytic subunit.
   
 
  0.480
LOC101501326
Probable ubiquitin conjugation factor E4.
     
 0.465
LOC101506928
E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.
     
 0.449
LOC101501355
NDR1/HIN1-like protein 1.
      
 0.422
LOC101512761
RBR-type E3 ubiquitin transferase.
     
0.414
LOC101497857
Uncharacterized protein LOC101497857.
     
 0.414
Your Current Organism:
Cicer arietinum
NCBI taxonomy Id: 3827
Other names: C. arietinum, Cicer arietinum L., chickpea, garbanzo
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.