STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101501663LOW QUALITY PROTEIN: protein ROOT INITIATION DEFECTIVE 3-like. (443 aa)    
Predicted Functional Partners:
LOC101508283
Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family.
  
 
 0.906
LOC101502892
Polynucleotide 5'-hydroxyl-kinase NOL9.
   
 0.899
LOC105852355
Nuclear/nucleolar GTPase 2; GTPase involved in pre-60S ribosomal subunit maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily.
   
 0.887
LOC101501991
Uncharacterized protein LOC101501991.
   
 0.883
LOC101506495
Uncharacterized protein LOC101506495 isoform X1.
   
 0.883
LOC101505150
Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.
   
 0.863
LOC101506869
Protein SDA1; Required for 60S pre-ribosomal subunits export to the cytoplasm; Belongs to the SDA1 family.
   
 
 0.840
LOC101492340
DAR GTPase 3, chloroplastic.
   
 0.831
LOC101490797
Guanine nucleotide-binding protein-like NSN1.
   
 0.831
LOC101503689
Uncharacterized protein LOC101503689.
   
 0.815
Your Current Organism:
Cicer arietinum
NCBI taxonomy Id: 3827
Other names: C. arietinum, Cicer arietinum L., chickpea, garbanzo
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.