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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPRI_0036NurA domain; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (344 aa)    
Predicted Functional Partners:
SPRI_0039
ATPase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
 
   0.946
SPRI_0037
Exonuclease SbcC; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.939
sbcD-2
Nuclease SbcCD subunit D; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.
 
     0.909
SPRI_7314
ATPase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
 
   0.901
SPRI_7315
Nuclease SbcCD subunit D; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.751
SPRI_7316
Exonuclease SbcC; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.743
SPRI_2208
ATP-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
   
   0.562
sbcD
DNA repair exonuclease; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.
 
     0.527
SPRI_7336
DNA repair exonuclease; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.527
SPRI_0035
Helicase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.476
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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