STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPRI_0102Pyridoxamine 5'-phosphate oxidase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (184 aa)    
Predicted Functional Partners:
SPRI_5541
Proteasome protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
   
    0.514
SPRI_1896
Protein in whiE locus; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.489
SPRI_0101
Major facilitator superfamily transporter permease; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.471
SPRI_6684
Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
    0.451
SPRI_5812
RNA-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.441
SPRI_0926
Transposase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
    0.415
SPRI_1900
Polyketide cyclase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.410
SPRI_4683
Preprotein translocase SecA; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.400
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.