STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPRI_0104Short-chain dehydrogenase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (246 aa)    
Predicted Functional Partners:
SPRI_0103
AcrR family transcriptional regulator; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.859
SPRI_6309
Pirin; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the pirin family.
  
  
 0.763
SPRI_7250
AcrR family transcriptional regulator; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.702
SPRI_1474
JadX; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
    0.587
SPRI_0689
Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
   
    0.497
SPRI_0495
UPF0337 protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the UPF0337 (CsbD) family.
  
    0.457
arcA
Arginine deiminase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
   
    0.456
SPRI_3439
Transcriptional regulator; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.456
SPRI_5310
Epimerase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
   
    0.456
SPRI_6623
3-demethylubiquinone-9 3-methyltransferase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
   
    0.443
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.