Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SPRI_0167FAD linked oxidase domain-containing protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (497 aa)    
Predicted Functional Partners:
SPRI_0166
3-oxoacyl-ACP synthase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
    0.838
SPRI_0169
Hydrolase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
    0.748
SPRI_0165
Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.732
SPRI_0155
Acyl carrier protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
 
   0.723
SPRI_7198
Acyl carrier protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
 
   0.723
trpF
Phosphoribosylanthranilate isomerase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the TrpF family.
  
     0.712
SPRI_7130
Phosphoribosylanthranilate isomerase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.712
SPRI_0164
Cyclopropane-fatty-acyl-phospholipid synthase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
    0.706
SPRI_0157
Putative (R)-specific enoyl-CoA hydratase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
 
 
 0.665
SPRI_7196
Putative (R)-specific enoyl-CoA hydratase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
 
 
 0.665
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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