Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
SPRI_0207Ester cyclase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (134 aa)    
Predicted Functional Partners:
snoaC
Methylase involved in ubiquinone/menaquinone biosynthesis; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
    
  0.947
SPRI_0205
C-7 ketoreductase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
     
  0.900
c104_12
Putative nucleoside-diphosphate sugar epimerase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.776
c104_13
Putative nucleoside-diphosphate sugar epimerase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.776
SPRI_1088
FAD-dependent oxidoreductase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.544
SPRI_0896
ATPase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.490
SPRI_3658
LysR family transcriptional regulator; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.473
c104_15
Stress protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.437
SPRI_4054
Pectate_lyase_3 domain containing protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.423
SPRI_5621
Lipoprotein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.414
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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