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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPRI_0229Acyl carrier protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (87 aa)    
Predicted Functional Partners:
SPRI_1260
NADH dehydrogenase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
 0.973
SPRI_0186
PII peptide synthetase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
 
 0.945
SPRI_7167
PII peptide synthetase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
 
 0.945
SPRI_0230
Putative amino acid adenyltransferase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
   0.940
SPRI_0291
Acyltransferase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
 0.919
SPRI_7062
Acyltransferase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
 0.919
ddl
D-alanine--D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
   
 
 0.902
SPRI_3146
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
    
  0.902
SPRI_0227
Tryptophan synthase, alpha chain; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the TrpA family.
 
     0.890
trpF
Phosphoribosylanthranilate isomerase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the TrpF family.
 
     0.872
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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