Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cpp12Beta-lactamase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (315 aa)    
Predicted Functional Partners:
cpp21
Ketoreductase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
    
 0.923
SPRI_5856
MBL fold metallo-hydrolase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
  
 
0.904
c104_07c
Polyketide cyclase / dehydrase and lipid transport; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
 
 0.869
cpp30
Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
 
 0.855
cpp11
Putative oxygenase/hydroxylase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
   0.560
cpp10
Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.517
cpp27
Putative C-glycosyltransferase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
   
 0.411
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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