STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
snaI3-hydroxy-3-methylglutaryl-ACP synthase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (416 aa)    
Predicted Functional Partners:
SPRI_0294
enoyl-CoA hydratase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family.
 
 
 0.898
snaJ
enyol-CoA hydratase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
 
 0.890
c106_07c
Acyl carrier protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
 
 0.873
SPRI_7104
Acyl carrier protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
 
 0.873
SPRI_0293
Hybrid PKS/NRPS (PKSI); Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
    0.844
snaH
beta-ketoacyl-ACP synthase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
  
 
 0.836
snaE4
Hybrid NRPS/PKS (PKSIV); Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
  
 0.820
SPRI_0300
Hybrid PKS/NRPS (PKSI); Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.819
snaG
Acyl carrier protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
 
 0.805
SPRI_0299
Hybrid PKS/NRPS (PKSI); Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
  
 0.795
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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