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Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
papR1Regulatory protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (285 aa)    
Predicted Functional Partners:
SPRI_6062
Regulator; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
    0.651
papR6
Putative two component regulator; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
   
  
 0.629
spbR
Gamma-butyrolactone receptor protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
     
 0.627
SPRI_5759
Transcriptional regulator; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
   
    0.539
papM
PapM; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.459
papB
Mutase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.459
SPRI_0301
Branched-chain alpha-keto acid decarboxylase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.458
cpp17
Putative acyl carrier protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
   
 0.444
SPRI_7088
Putative acyl carrier protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
   
 0.444
SPRI_0161
DNA-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.430
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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