Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
pipALysine cyclodeaminase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (355 aa)    
Predicted Functional Partners:
SPRI_7045
Lysine cyclodeaminase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
 
  
0.900
SPRI_2093
Crystallin; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
      
 0.648
SPRI_2745
Crystallin; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
      
 0.618
SPRI_5478
Crystallin; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
      
 0.618
SPRI_5479
Crystallin; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
      
 0.618
SPRI_5480
Crystallin; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
      
 0.618
SPRI_5481
Crystallin; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
      
 0.618
SPRI_5761
Crystallin; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
      
 0.618
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
  
  
 0.610
SPRI_0186
PII peptide synthetase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
     
 0.594
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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