Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
hpaAAminotransferase DegT; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the DegT/DnrJ/EryC1 family. (422 aa)    
Predicted Functional Partners:
SPRI_3614
UDP-phosphate galactose phosphotransferase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
  
 0.923
SPRI_1999
Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
 0.914
SPRI_2892
Sugar transferase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
  
 0.909
snbA
Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
  
 0.836
SPRI_3113
UDP-glucose/GDP-mannose dehydrogenase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
 
  
 0.799
SPRI_3645
degT/DnrJ/EryC1/StrS aminotransferase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
   0.787
snbT
Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the 4-oxalocrotonate tautomerase family.
   
   0.650
SPRI_2992
N-acetylneuraminate synthase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
  
 0.607
snbF
Cytochrome P450; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family.
     
 0.594
SPRI_2000
GDP-mannose dehydrogenase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
 
  
 0.543
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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