Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SPRI_0359Ornithine decarboxylase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (492 aa)    
Predicted Functional Partners:
SPRI_2337
Agmatine deiminase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the agmatine deiminase family.
    
 0.930
SPRI_1308
Amidinotransferase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
     
 0.909
arcA
Arginine deiminase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
    
 0.844
argH
Argininosuccinate lyase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
     
 0.839
SPRI_0360
Oxidoreductase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.517
SPRI_3770
Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.463
SPRI_0358
Signal transduction histidine kinase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.437
SPRI_4778
Agmatinase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the arginase family.
 
  
 0.422
SPRI_2427
Clp protease; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.409
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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