STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPRI_0372CchlM; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (730 aa)    
Predicted Functional Partners:
SPRI_2211
Chitinase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 18 family.
 
  
 0.689
SPRI_2863
Chitinase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
  
 0.672
SPRI_2514
Chitinase C; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
 
 
 0.656
SPRI_4722
Glycoside hydrolase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 18 family.
 
 
 
 0.627
SPRI_0883
Cellulose 1,4-beta-cellobiosidase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
   
 0.585
SPRI_2782
Chitinase II; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 18 family.
 
 
 
 0.561
SPRI_1817
Cellulose binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
  
 0.535
SPRI_1710
Chitinase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.456
SPRI_2334
Glycosyl hydrolase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 30 family.
 
   
 0.450
SPRI_0828
Branched-chain amino acid ABC transporter substrate-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.440
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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