Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-expression
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[Homology]
Score
SPRI_0391Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (68 aa)    
Predicted Functional Partners:
SPRI_0389
acyl-CoA carboxylase complex A subunit; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
   
 
 0.866
SPRI_0392
methylmalonyl-CoA carboxyltransferase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
 
 0.829
SPRI_0390
methylmalonyl-CoA mutase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.724
SPRI_1955
Allophanate hydrolase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
    
   0.619
SPRI_1956
Allophanate hydrolase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
    
   0.619
SPRI_2955
acetyl-CoA carboxylase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
   
 
 0.537
SPRI_4211
acetyl-CoA carboxylase subunit alpha; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
   
 
 0.537
SPRI_4765
Acetyl/propionyl CoA carboxylase alpha subunit; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
   
 
 0.537
SPRI_2948
methylmalonyl-CoA carboxyltransferase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
 
 0.429
tuf
Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
   
    0.426
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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