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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPRI_0397acyl-CoA dehydrogenase domain-containing protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (351 aa)    
Predicted Functional Partners:
SPRI_0399
acyl-CoA dehydrogenase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
   0.991
SPRI_5854
acyl-CoA dehydrogenase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
   0.962
SPRI_0398
Short-chain dehydrogenase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
   0.704
SPRI_1647
NADP-dependent oxidoreductase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
    0.584
SPRI_0400
fatty-acid--CoA ligase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
   0.567
SPRI_5843
Dehydratase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
 
 0.565
SPRI_0403
Acyl dehydratase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
 
 0.547
SPRI_4763
acyl-CoA dehydrogenase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
   0.546
SPRI_5841
acyl-CoA dehydrogenase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
   0.534
SPRI_1130
enoyl-CoA hydratase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
 
 0.531
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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