Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Gene Fusion
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[Homology]
Score
SPRI_04501,3-beta-glucanase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (425 aa)    
Predicted Functional Partners:
SPRI_3346
Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.631
SPRI_1710
Chitinase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
    
0.592
SPRI_2211
Chitinase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 18 family.
 
   
 0.539
SPRI_4138
Membrane protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.530
SPRI_2514
Chitinase C; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
  
 0.525
SPRI_0722
Sugar hydrolase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
   
 0.510
SPRI_0449
Transmembrane efflux protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.462
SPRI_2863
Chitinase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.457
SPRI_0369
Secreted serine protease; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.439
SPRI_2624
ABC transporter substrate-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the peptidase M7 family.
  
     0.415
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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