Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
SPRI_0489Acetyl xylan esterase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (323 aa)    
Predicted Functional Partners:
SPRI_6324
Acetyl xylan esterase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
  
 
0.903
SPRI_1011
Amino acid oxidase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
     
  0.900
SPRI_0490
Cupin; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.575
SPRI_6744
Tat pathway signal sequence domain protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.536
SPRI_0550
Beta-mannosidase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.457
SPRI_0079
Solute binding lipoprotein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.455
SPRI_7274
Solute binding lipoprotein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.455
SPRI_1023
Sugar-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.454
SPRI_1874
Sugar-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.435
SPRI_6571
Beta-galactosidase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
    0.424
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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