Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
SPRI_0523Dihydrodipicolinate reductase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (359 aa)    
Predicted Functional Partners:
SPRI_0524
Carboxymuconolactone decarboxylase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.970
SPRI_0525
Cholesterol oxidase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.767
SPRI_6959
DNA-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.662
SPRI_5498
CoA-transferase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.655
SPRI_5497
CoA-transferase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.650
SPRI_5488
acyl-CoA dehydrogenase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.615
SPRI_6960
Lipid-transfer protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.558
SPRI_5489
Short-chain dehydrogenase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
    0.532
SPRI_6162
benzoylsuccinyl-CoA thiolase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.526
SPRI_5499
enoyl-CoA hydratase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.525
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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