Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SPRI_0525Cholesterol oxidase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (547 aa)    
Predicted Functional Partners:
SPRI_3107
Oxidase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
  
 
0.909
SPRI_5168
Putative cytochrome P450; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family.
     
 0.904
SPRI_0524
Carboxymuconolactone decarboxylase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.776
SPRI_0523
Dihydrodipicolinate reductase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.767
SPRI_4976
Serine/threonine protein kinase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.606
SPRI_1903
Secreted protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
 
 0.584
SPRI_5349
Cystathionine beta-lyase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
 
 0.584
SPRI_0526
GDSL family lipase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.548
SPRI_5367
Glycosyl transferase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
    0.547
SPRI_0186
PII peptide synthetase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
     
 0.540
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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