STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPRI_0540DUF2236 domain-containing protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (386 aa)    
Predicted Functional Partners:
SPRI_0541
Polyprenyl synthetase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the FPP/GGPP synthase family.
 
   
 0.912
SPRI_0542
Polyprenyl synthetase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.780
SPRI_0799
Lactamase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
  
 0.768
SPRI_0617
Phage protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.566
SPRI_3342
XRE family transcriptional regulator; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.496
SPRI_1033
Appr-1-p processing protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
  
 0.457
SPRI_2793
ATP-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.452
SPRI_3496
Major facilitator transporter; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.450
SPRI_2794
Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.442
SPRI_3471
Nikkomycin biosynthsis protein SanV; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.441
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.