Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SPRI_0584ROK family transcriptional regulator; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (440 aa)    
Predicted Functional Partners:
SPRI_6112
Transcriptional regulator; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.757
SPRI_0585
Sugar ABC transporter substrate-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
    0.644
SPRI_0586
Transmembrane sugar transporter; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
   
 0.621
SPRI_0587
Transmembrane sugar transporter; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.556
SPRI_4643
PTS sugar transporter; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
 
 0.491
SPRI_0588
Beta-glucosidase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
  
 0.469
SPRI_0583
Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.443
SPRI_6864
PTS lactose transporter subunit IIC; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
  
 0.401
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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