Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SPRI_0665Membrane protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (132 aa)    
Predicted Functional Partners:
SPRI_1979
Cytoplasmic protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.648
SPRI_0666
Cation-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.617
SPRI_0340
Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.569
SPRI_0658
Phosphodiesterase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.558
SPRI_6993
NdaS; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.434
SPRI_6881
Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.424
SPRI_6995
Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.418
SPRI_1886
Glycosyl transferase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.412
SPRI_6310
Cation transport regulator ChaB; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
   
 0.407
SPRI_0594
Cyclase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.405
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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