Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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[Homology]
Score
SPRI_0673Acetyltransferase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (194 aa)    
Predicted Functional Partners:
SPRI_0674
Peptide ABC transporter substrate-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.711
SPRI_6806
Bcav; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.615
SPRI_6805
Outer membrane channel; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.612
SPRI_0677
Peptide ABC transporter ATPase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.603
SPRI_0676
ABC transporter permease; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.597
SPRI_0675
Peptide ABC transporter permease; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.585
SPRI_0672
Cobalamin biosynthesis protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.581
SPRI_6804
Outer membrane channel; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.550
SPRI_1388
Endonuclease; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.535
SPRI_6839
ABC transporter substrate-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.530
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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