SPRI_0682 protein (Streptomyces pristinaespiralis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

SPRI_0682

Putative integron gene cassette protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (160 aa)

Predicted Functional Partners:

SPRI_0949

0.830

c106_07c

0.742

SPRI_7104

0.742

SPRI_5220

0.686

SPRI_1844

0.640

SPRI_3366

0.618

arc

0.563

SPRI_6786

0.560

SPRI_2290

0.553

gmk

0.552

Your Current Organism:

Streptomyces pristinaespiralis

NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SPRI_0682	SPRI_0949	SPRI_0682	SPRI_0949	Putative integron gene cassette protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	Tetratricopeptide TPR_1 repeat-containing protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	0.830
SPRI_0682	SPRI_1844	SPRI_0682	SPRI_1844	Putative integron gene cassette protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	0.640
SPRI_0682	SPRI_2290	SPRI_0682	SPRI_2290	Putative integron gene cassette protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	Heat shock protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	0.553
SPRI_0682	SPRI_3366	SPRI_0682	SPRI_3366	Putative integron gene cassette protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	Acetoin utilization protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	0.618
SPRI_0682	SPRI_5220	SPRI_0682	SPRI_5220	Putative integron gene cassette protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	Helicase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	0.686
SPRI_0682	SPRI_6786	SPRI_0682	SPRI_6786	Putative integron gene cassette protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	Tyrosine protein phosphatase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	0.560
SPRI_0682	SPRI_7104	SPRI_0682	SPRI_7104	Putative integron gene cassette protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	Acyl carrier protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	0.742
SPRI_0682	arc	SPRI_0682	SPRI_5908	Putative integron gene cassette protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	ATPase AAA; ATPase which is responsible for recognizing, binding, unfolding and translocation of pupylated proteins into the bacterial 20S proteasome core particle. May be essential for opening the gate of the 20S proteasome via an interaction with its C-terminus, thereby allowing substrate entry and access to the site of proteolysis. Thus, the C-termini of the proteasomal ATPase may function like a 'key in a lock' to induce gate opening and therefore regulate proteolysis.	0.563
SPRI_0682	c106_07c	SPRI_0682	SPRI_0249	Putative integron gene cassette protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	Acyl carrier protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	0.742
SPRI_0682	gmk	SPRI_0682	SPRI_6089	Putative integron gene cassette protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.	0.552
SPRI_0949	SPRI_0682	SPRI_0949	SPRI_0682	Tetratricopeptide TPR_1 repeat-containing protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	Putative integron gene cassette protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	0.830
SPRI_0949	SPRI_1844	SPRI_0949	SPRI_1844	Tetratricopeptide TPR_1 repeat-containing protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	0.666
SPRI_0949	SPRI_2290	SPRI_0949	SPRI_2290	Tetratricopeptide TPR_1 repeat-containing protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	Heat shock protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	0.799
SPRI_0949	SPRI_3366	SPRI_0949	SPRI_3366	Tetratricopeptide TPR_1 repeat-containing protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	Acetoin utilization protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	0.668
SPRI_0949	SPRI_5220	SPRI_0949	SPRI_5220	Tetratricopeptide TPR_1 repeat-containing protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	Helicase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	0.698
SPRI_0949	SPRI_7104	SPRI_0949	SPRI_7104	Tetratricopeptide TPR_1 repeat-containing protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	Acyl carrier protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	0.763
SPRI_0949	arc	SPRI_0949	SPRI_5908	Tetratricopeptide TPR_1 repeat-containing protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	ATPase AAA; ATPase which is responsible for recognizing, binding, unfolding and translocation of pupylated proteins into the bacterial 20S proteasome core particle. May be essential for opening the gate of the 20S proteasome via an interaction with its C-terminus, thereby allowing substrate entry and access to the site of proteolysis. Thus, the C-termini of the proteasomal ATPase may function like a 'key in a lock' to induce gate opening and therefore regulate proteolysis.	0.918
SPRI_0949	c106_07c	SPRI_0949	SPRI_0249	Tetratricopeptide TPR_1 repeat-containing protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	Acyl carrier protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	0.763
SPRI_0949	gmk	SPRI_0949	SPRI_6089	Tetratricopeptide TPR_1 repeat-containing protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.	0.548
SPRI_1844	SPRI_0682	SPRI_1844	SPRI_0682	Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	Putative integron gene cassette protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	0.640