Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SPRI_0706Membrane protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (424 aa)    
Predicted Functional Partners:
SPRI_0705
Aldolase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
 0.990
SPRI_0709
Asp/Glu racemase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.853
SPRI_0707
3-isopropylmalate dehydrogenase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.616
SPRI_5676
Fuculose phosphate aldolase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
  
 0.604
SPRI_1571
Hydroxypyruvate isomerase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
  
 0.571
SPRI_5628
NAD-dependent dehydratase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
    0.496
SPRI_4915
Glucarate dehydratase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
    0.483
SPRI_0708
Translation initiation factor 2; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.468
SPRI_6246
Gluconolactonase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
   
 0.451
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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