Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
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Databases
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[Homology]
Score
SPRI_0799Lactamase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (276 aa)    
Predicted Functional Partners:
SPRI_0540
DUF2236 domain-containing protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
  
 0.807
SPRI_2155
Two-component system sensor kinase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
  
 0.709
SPRI_0798
Arylsulfatase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.615
SPRI_3992
Phosphate transport regulator; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
   
    0.505
SPRI_6629
Phosphoketolase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
   
    0.493
SPRI_1133
Histidine kinase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
    0.483
panD
Aspartate decarboxylase; Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine.
       0.458
SPRI_3958
Hemin transporter; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the globin family.
  
  
 0.457
SPRI_5022
Nitrite reductase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
  
  
 0.448
SPRI_5023
Nitrite reductase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
  
 0.448
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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