Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SPRI_0803Transposase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (352 aa)    
Predicted Functional Partners:
SPRI_0806
Multidrug DMT transporter permease; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
    0.851
SPRI_4249
Cyclase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
  
 0.817
SPRI_0802
AraC family transcriptional regulator; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.792
SPRI_6514
Cupin 2; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
    0.758
SPRI_0805
Taurine dioxygenase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.753
SPRI_0807
Alpha/beta hydrolase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.700
SPRI_0804
Quinone oxidoreductase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
   
 0.681
SPRI_0582
PE-PGRS family protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.498
c104_09c
acyl-CoA dehydrogenase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.493
SPRI_7155
acyl-CoA dehydrogenase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.493
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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