STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPRI_0812Pectate lyase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (518 aa)    
Predicted Functional Partners:
SPRI_1173
Polysaccharide lyase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
  
  0.987
SPRI_0813
Pectate lyase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
 0.978
SPRI_0876
Pectin esterase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
 
 0.964
SPRI_0877
Pectate lyase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
  
 0.952
SPRI_1529
Pectate lyase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
 
0.937
SPRI_0875
Secreted pectate lyase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
0.933
SPRI_6276
Chitin binding domain protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
   
 0.742
SPRI_1191
Cellulose-binding family II protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
   
 0.709
SPRI_0426
alpha-L-arabinofuranosidase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.700
SPRI_0427
1,4-beta-xylanase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
   
 0.678
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.