SPRI_0850 protein (Streptomyces pristinaespiralis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

SPRI_0850

Deaminase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (187 aa)

Predicted Functional Partners:

SPRI_0365

0.633

SPRI_0081

0.597

SPRI_7272

0.597

SPRI_0851

0.509

clpX

0.505

SPRI_1406

0.454

Your Current Organism:

Streptomyces pristinaespiralis

NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SPRI_0081	SPRI_0850	SPRI_0081	SPRI_0850	DNA-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	Deaminase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	0.597
SPRI_0081	clpX	SPRI_0081	SPRI_4902	DNA-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	ATP-dependent Clp protease ATP-binding subunit clpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.	0.505
SPRI_0365	SPRI_0850	SPRI_0365	SPRI_0850	Riboflavin biosynthesis protein RibD; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	Deaminase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	0.633
SPRI_0365	clpX	SPRI_0365	SPRI_4902	Riboflavin biosynthesis protein RibD; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	ATP-dependent Clp protease ATP-binding subunit clpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.	0.505
SPRI_0850	SPRI_0081	SPRI_0850	SPRI_0081	Deaminase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	DNA-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	0.597
SPRI_0850	SPRI_0365	SPRI_0850	SPRI_0365	Deaminase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	Riboflavin biosynthesis protein RibD; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	0.633
SPRI_0850	SPRI_0851	SPRI_0850	SPRI_0851	Deaminase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	Cytochrome P450; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family.	0.509
SPRI_0850	SPRI_1406	SPRI_0850	SPRI_1406	Deaminase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	Riboflavin biosynthesis protein RibD; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	0.454
SPRI_0850	SPRI_7272	SPRI_0850	SPRI_7272	Deaminase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	DNA-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	0.597
SPRI_0850	clpX	SPRI_0850	SPRI_4902	Deaminase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	ATP-dependent Clp protease ATP-binding subunit clpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.	0.505
SPRI_0851	SPRI_0850	SPRI_0851	SPRI_0850	Cytochrome P450; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family.	Deaminase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	0.509
SPRI_1406	SPRI_0850	SPRI_1406	SPRI_0850	Riboflavin biosynthesis protein RibD; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	Deaminase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	0.454
SPRI_1406	clpX	SPRI_1406	SPRI_4902	Riboflavin biosynthesis protein RibD; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	ATP-dependent Clp protease ATP-binding subunit clpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.	0.505
SPRI_7272	SPRI_0850	SPRI_7272	SPRI_0850	DNA-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	Deaminase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	0.597
SPRI_7272	clpX	SPRI_7272	SPRI_4902	DNA-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	ATP-dependent Clp protease ATP-binding subunit clpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.	0.505
clpX	SPRI_0081	SPRI_4902	SPRI_0081	ATP-dependent Clp protease ATP-binding subunit clpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.	DNA-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	0.505
clpX	SPRI_0365	SPRI_4902	SPRI_0365	ATP-dependent Clp protease ATP-binding subunit clpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.	Riboflavin biosynthesis protein RibD; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	0.505
clpX	SPRI_0850	SPRI_4902	SPRI_0850	ATP-dependent Clp protease ATP-binding subunit clpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.	Deaminase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	0.505
clpX	SPRI_1406	SPRI_4902	SPRI_1406	ATP-dependent Clp protease ATP-binding subunit clpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.	Riboflavin biosynthesis protein RibD; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	0.505
clpX	SPRI_7272	SPRI_4902	SPRI_7272	ATP-dependent Clp protease ATP-binding subunit clpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.	DNA-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	0.505