Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SPRI_0915Putative caspase domain protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (679 aa)    
Predicted Functional Partners:
SPRI_0914
Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.792
SPRI_0913
Proteoglycan 4; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.780
SPRI_0916
Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.727
SPRI_4104
Trehalose phosphatase; Removes the phosphate from trehalose 6-phosphate to produce free trehalose.
   
    0.565
SPRI_1408
Peptidase C14; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.489
SPRI_6723
ATPase AAA; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.489
SPRI_6021
DSBA oxidoreductase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
    0.488
nhaA
pH-dependent sodium/proton antiporter; Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons; Belongs to the NhaA Na(+)/H(+) (TC 2.A.33) antiporter family.
   
    0.486
SPRI_6714
GPW/gp25 family protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.461
SPRI_6728
Tail protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.434
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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