Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
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[Homology]
Score
SPRI_0929Amidohydrolase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (527 aa)    
Predicted Functional Partners:
SPRI_0928
4'-phosphopantetheinyl transferase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the P-Pant transferase superfamily.
       0.776
SPRI_0930
ABC transporter; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.752
SPRI_0931
Membrane protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
       0.746
SPRI_0932
Ferric enterobactin transport system permease fepD; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
       0.746
SPRI_6136
Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
  
 0.711
SPRI_2910
Dolichol-phosphate mannosyltransferase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
    0.648
SPRI_0934
Multidrug ABC transporter permease; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.449
SPRI_0933
ABC transporter protein, ATP-binding component; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.446
c104_03
Penicillin-binding protein, beta-lactamase class C; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.408
SPRI_7149
Penicillin-binding protein, beta-lactamase class C; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.408
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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