Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
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Databases
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[Homology]
Score
SPRI_0966Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (341 aa)    
Predicted Functional Partners:
SPRI_0967
Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.950
SPRI_0969
Periplasmic protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.914
SPRI_0968
Putative cytoplasmic protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.898
SPRI_0972
Radical SAM protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.896
SPRI_0970
Metalloenzyme domain-containing protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.890
SPRI_0971
Coproporphyrinogen III oxidase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.882
SPRI_4434
Lipoprotein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
   
   0.743
SPRI_6721
Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
   
   0.743
SPRI_4474
Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.721
SPRI_0015
Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.648
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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