Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SPRI_0980Hopanoid biosynthesis associated radical SAM protein HpnH; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (339 aa)    
Predicted Functional Partners:
SPRI_0982
Squalene-hopene cyclase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
   
 0.976
SPRI_0981
1-hydroxy-2-methyl-2-butenyl 4-diphosphate reductase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
   
 0.964
SPRI_0984
Squalene/phytoene dehydrogenase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
  
 0.932
SPRI_0979
Aminotransferase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
   
 0.874
SPRI_0986
Squalene synthase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
   
 0.853
SPRI_0983
Polyprenyl diphosphate synthase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the FPP/GGPP synthase family.
 
   
 0.820
SPRI_0985
Squalene/phytoene synthase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
   
 0.812
SPRI_2155
Two-component system sensor kinase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
  
 0.806
SPRI_6457
Glycosyl transferase family 2; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
   
 0.788
SPRI_0558
Cobalamin-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
  
 0.751
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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