Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
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[Homology]
Score
SPRI_0990Transferase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (247 aa)    
Predicted Functional Partners:
SPRI_0989
Glycosyl transferase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.970
SPRI_0993
Transferase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
 
     0.942
SPRI_0992
Nucleotide sugar-1-phosphate transferase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.926
SPRI_0991
Dehydrogenase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
   
 0.898
SPRI_3325
Glycosyl transferase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.790
SPRI_2152
Membrane protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
    0.742
SPRI_4512
Glycosyl transferase family 2; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
   
 0.716
SPRI_0994
UDP-glucose 4-epimerase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
     
 0.689
SPRI_5239
DNA primase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.640
SPRI_0995
Cation transporter; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
    0.635
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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