STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPRI_0998ATPase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (158 aa)    
Predicted Functional Partners:
SPRI_0999
HDED protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.760
SPRI_6969
Regulatory protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
   
 0.751
SPRI_2270
Negative regulator NsdA; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
   
 0.740
SPRI_5678
Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.734
SPRI_3965
Sporulation associated protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
   
 0.717
SPRI_2652
Tetratricopeptide repeat domain-containing protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.716
SPRI_5308
Regulator; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
   
 0.714
SPRI_3381
Alanine-rich protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
   
 0.711
SPRI_3736
Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.704
SPRI_1000
enoyl-CoA hydratase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.703
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.