Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SPRI_1019BCCT family transporter; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the BCCT transporter (TC 2.A.15) family. (595 aa)    
Predicted Functional Partners:
SPRI_5934
Glycine/betaine ABC transporter permease; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
   
 0.638
SPRI_1020
Carboxypeptidase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.612
SPRI_3058
Oxidoreductase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
  
 0.540
SPRI_1344
NUDIX hydrolase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.480
SPRI_6603
Sulfate permease; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
    0.462
SPRI_3416
ABC transporter ATP-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
   
 0.446
SPRI_5933
Glycine/betaine ABC transporter ATP-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
   
 0.435
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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